Tuesday, January 31, 2017

pGLO Lab

1.
Obtain your team plates.  Observe your set of  “+pGLO” plates under room light and with UV light.  Record numbers of colonies and color of colonies. Fill in the table below.

Plate
Number of Colonies
Color of Colonies Under Room Light
Color of Colonies Under UV Light
-pGLO LB
0
Tan
Purple (the color of UV light)
+pGLO LB/amp
About 58
Tan
Purple (the color of UV light)
+pGLO LB/amp/ara
About 99
Tan
Green

2.
What two new traits do your transformed bacteria have?
The transformed bacteria glows green under the UV light and the bacteria is now resistant to the antibiotic ampicillin.

3.
Estimate how many bacteria were in the 100 uL of bacteria that you spread on each plate. Explain your logic.

An E. Coli cell is about 2 micrometers cubed and 1 micrometer is equal to (1e+9), which is 1,000,000,000. Since we spread 100 microliters of bacteria onto each plate, there were 100 times 1,000,000,000 bacteria on the plate, equalling a total of 100,000,000,000 bacteria that we spread on each plate.
4.
What is the role of arabinose in the plates?
The role of the arabinose was to help the bacteria glow and to actually activate the pGLO plasmid. As was stated in the vodcast, the protein GFP is supposed to make the bacteria glow, but in order for the GFP to be activated, the arabinose is used to trigger that protein, making the bacteria glow..
5.
List and briefly explain three current uses for GFP (green fluorescent protein) in research or applied science.
  • GFP can be used to serve as a marker protein, where when it attaches to and mark another protein, the scientists are then able to see the presence of that protein.
  • GFP can also be used to study bacteria more easily.
  • GFP can also be used to study diseases like HIV and track the spreading of those diseases.
6.
Give an example of another application of genetic engineering.

Genetic engineering has many applications in the medical field. One of the earliest applications of genetic engineering in pharmaceuticals was gene splicing to mass produce insulin in the body.



IMG_7078.JPG
-pGLO LB without UV light
IMG_7073.JPG
-pGLO LB with UV light


IMG_7080.JPG
+pGLO LB/amp without UV light


IMG_7075.JPG
+pGLO LB/amp with UV light


IMG_7081.JPG
+pGLO LB/amp/ara without UV light


IMG_7076.JPG
+pGLO LB/amp/ara with UV light

Thursday, January 19, 2017

Candy Electrophoresis Lab


In this lab, we used the process called Gel Electrophoresis to observe the different colors of the candies. Comparing the four reference dyes to the four experimental sample, they acted similarly, meaning they moved at about the same rate and the bands were about the same size. In addition, all of the dyes moved in the “right” direction, from the negative end to the positive end of the gel.
The four on the left were the reference dyes and the four on the right were the experimental samples.
Just_dyes_bio_before_experiment.jpg
These were the samples after the process. The 3 yellow bands were at about the same length and were the same color. The 2 red bands, similarly, were the same length and their colors were almost identical. Like the yellow and red bands, the 2 orange bands looked very similar. However, the green experimental sample seemed to split into two separate bands, one yellow, which acted similar to the yellow reference dye, and one blue, which was the same length but a lighter color than the blue reference dye.
Just_Dyes_after_experiment_bio.jpg
Looking at the 4 dye structures, Betanin, Carminic Acid, Fast Green FCF, and Citrus red 2, Fast Green FCF has the same structure as the blue reference dye, which is why the Fast Green FCF would react similarly to the blue reference dye. Since the structures with the longest length move the slowest, and in this experiment the blue dye moved the slowest, structures with lengths longer than Fast Green FCF wouldn’t be comparable to the dyes from this experiment, which is why Betanin wouldn’t act similar to any of the dyes from this experiment. In this experiment, the blue dye moved the slowest out of the other dyes by a noticeable amount. Since Carminic Acid has a structure similar but not identical to Fast Green FCF, and the blue dye from the experimental sample, which came from skittles, had a structure similar but not identical to the blue dye, the Carminic Acid would be comparable to the blue band that split out of the green experimental sample. In addition, since the shorter structured band travels the fastest and the structure is similar to the yellow reference dye, the Citrus red 2 would be comparable to the yellow bands from the experiment.
Artificial food coloring is put in many foods including those for dogs as a strategy to make the food appear more appealing. The foods with a more appealing look would be bought by more people, making the company more money but also encouraging them and other companies to add more artificial food coloring to be placed in dog food.
In the process of Gel Electrophoresis, the main factors that contribute to the migration of the dyes are their size, the electrical current passing through, and for how long we left the electrical current passing through. The smaller the size the faster the dye passes through the gel as shown by the yellow dyes. However, as the longer dyes pass through much slower as shown by the blue dyes. In this experiment, we had the bands electrophoresed for 15 minutes at 100 volts. However, the main force that causes the process of Gel Electrophoresis to occur is the electrical current.
There are small holes in the agarose. Because of the size of the bands, the smaller structures are able to move through the gels more easily and thereby quicker. As a result of moving at a slower pace, the longer strands get left behind, which is how the molecules are able to separate by size. If the molecules with the molecular weight of 600, 1000, 2000, and 5000 daltons, I believe the molecules with the molecular weight of 600 would travel the farthest, the molecule with 1000 daltons would travel second fastest, the molecule with 2000 daltons would come in third, and the molecule with 5000 daltons would move the shortest distance.

Tuesday, January 10, 2017

New Year Goals

Throughout last semester, I saw myself wondering how 24 hours a day went by so quickly. I allotted 9 hours to school, 6 hours to sleep, and 3 hours to extracurricular activities per day. That would leave me with about 6 hours of homework and studying. Six hours is enough to review the day, finish my homework and any studying that would entail, and prepare for the next day. However that management of my time never truly came into action last semester due to not being able to manage my time as well as I could have, as I was struggling to sleep on time, I wasn’t focusing my full effort on the task that I was completing, be it studying for science or english or math, or even watching a vodcast. This semester I will be better at managing my time. I will put my full attention onto that vodcast that I will watch, or the textbook notes that I will complete. This would lead to me gaining a better understanding of the topic but also leaving me with ample time to finish the rest of the tasks at hand. This semester through managing my time better, I will make sure I am able to complete every task at hand without getting distracted and with my full attention, which would be measured by my improving school performance.
However, procrastination and being unable to manage time right come together. As a result of me not managing my time as well as I could have, it lead to me procrastinating on small things. However once you start to procrastinate, you end up getting caught in a never ending cycle until a solid break. This semester I will not procrastinate. The day I get assigned the vodcast is when I will finish it rather than leaving it off until the next day, the day before the class it’s due. And when we write our lab conclusions or unit reflections, I will work my hardest to finish it during class instead of leaving it until I get home, which leads to me struggling to turn in work that I know could have been better a minute before the 11:59 p.m. deadline. This semester will be the semester where I will not put off a single task until later. I will manage my time better, reducing my procrastination, which could also be measured by my improving school performance.